PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G088400.1
Common NameB456_004G088400, LOC105790811
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 544aa    MW: 59120.3 Da    PI: 8.6165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G088400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0580102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.004G088400.1  80 FVCEICNKGFQRDQNLQLHRRGH 102
                         89*******************88 PP

2zf-C2H215.55e-05156178123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H++t+
  Gorai.004G088400.1 156 WKCDKCSKKYAVQSDWKAHQKTC 178
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.5E-879102No hitNo description
Gene3DG3DSA:3.30.160.601.8E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM0035598121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.5E-8151177No hitNo description
SMARTSM0035594156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MSNMSGDDDG SFSSGEEVQQ QKQLLQNNFA ASGSGPSAAS NSNNGSQQAV KKKRNLPGTP  60
DPNAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTTTEVKKRV  120
YICPEPTCVH HNPARALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHQKTCGT  180
REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQGLMN NMGSNMQNQM PELISSMQTS  240
NGISDLGNFD PKSPLKSHPQ ELVPMPFMSM NMGGGMFSSS SSSLFGGPRS VSSASSSLQL  300
SSNSSSGLNY LQDSKNGCPI MSATALLQKA AQMGATASNS INSPMMQKSF ASSMAGPEQT  360
IRPPSFGGIQ QQNTSYDHFP SQTDQTSMVG ISEAGGFSNP FMQKSPSEMA QLFTAATGSS  420
AMNEMGMFTN MFINGADRNQ VGLMKSMEQE DSGSSSLLQG RTQLPAAMFG TSSGNGGSNM  480
TTLDFMGIGG SRPNSLHEQQ QQQQQRMELE AISQQRLPMI NPFHLQQQLS HGDSAIEKPI  540
WEV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147731e-110JX614773.1 Gossypium hirsutum clone NBRI_GE58407 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474035.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-117IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A0D2RVW10.0A0A0D2RVW1_G
STRINGPOPTR_0002s20950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15443818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.18e-99C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]